Schedule

ICSB 2009	Sunday August 30	Monday August 31	Tuesday September 1	Wednesday September 2	Thursday September 3	Friday September 4
	Tutorials & Opening Reception	Conference				Workshops
7:00 a.m.	7:00 - 6:00 Registration Memorial Auditorium	7:00 - 8:00 Breakfast Dohrmann Grove	7:00 - 8:00 Breakfast Dohrmann Grove	7:00 - 8:00 Breakfast Dohrmann Grove	7:00 - 8:00 Breakfast Dohrmann Grove	7:00 - 8:00 Continental Breakfast Jordan Hall Courtyard
7:30 a.m.
8:00 a.m.		8:00 - 10:30 Plenary Session 1: Genomes Memorial Auditorium	8:00 - 10:30 Plenary Session 3: Computational Methods Memorial Auditorium	8:00 - 10:30 Plenary Session 5: Signaling Networks Memorial Auditorium	8:00 - 10:30 Plenary Session 7: Systems Virology Memorial Auditorium
8:30 a.m.
9:00 a.m.	9:15 - 11:45 Tutorials 1-4 Hewlett					9:00 - 6:00 Workshops 2-3 Jordan Hall 420 12:00 - 12:30 Lunch Jordan Hall Courtyard
9:30 a.m.
10:00 a.m.
10:30 a.m.		10:30 - 11:00 Coffee Dohrmann Grove	10:30 - 11:00 Coffee Dohrmann Grove	10:30 - 11:00 Coffee Dohrmann Grove	10:30 - 11:00 Coffee Dohrmann Grove
11:00 a.m.
11:30 a.m.		11:00 - 1:00 Breakout Sessions 1-3 Various Locations	11:00 - 1:00 Plenary Session 4: Chemical Tools Memorial Auditorium	11:00 - 1:00 Breakout Sessions 4-6 Various Locations	11:00 - 1:00 Breakout Sessions 7-9 Various Locations
12:00 p.m.	12:15 - 2:45 Tutorials 5-8 Hewlett
12:30 p.m.
1:00 p.m.		1:00 - 4:00 Lunch, Poster Session 1, Exhibitions Arrillaga Alumni Center, McCaw Hall	1:00 - 5:00 Lunch, Poster Session 2, Exhibitions Arrillaga Alumni Center, McCaw Hall	1:00 - 4:00 Lunch, Poster Session 3, Exhibitions Arrillaga Alumni Center, McCaw Hall	1:00 - 1:30 Lunch Dohrmann Grove
1:30 p.m.
2:00 p.m.					1:30 - 4:00 Tutorials 9-13 Hewlett 1:30 - 7:00 Workshops 1-2 Jordan Hall 420
2:30 p.m.
3:00 p.m.	3:00 - 6:00 Opening ceremony, keynote lectures Memorial Auditorium
3:30 p.m.
4:00 p.m.		4:00 - 6:00 Plenary Session 2: Imaging Memorial Auditorium		4:00 - 6:00 Plenary Session 6: Dynamics Memorial Auditorium
4:30 p.m.
5:00 p.m.			2:00 - 10:00 San Francisco Excursion
5:30 p.m.
6:00 p.m.	6:00 - 10:00 Welcome reception and press meeting Dohrmann Grove	6:00 - 8:00 Posters area open Arrillaga Alumni Center, McCaw Hall 6:00 - 8:00 Entrepreneurship in Systems Biology: Panel/Reception Arrillaga Alumni Center, Fisher Room		6:00 - 8:00 Posters area open Arrillaga Alumni Center, McCaw Hall
6:30 p.m.
7:00 p.m.
7:30 p.m.
8:00 p.m.
8:30 p.m.
9:00 p.m.
9:30 p.m.

Search Program

Category	All Keynote Plenary Breakout Poster Panel Workshop Tutorial Exhibition
Title, Abstract
Presenter
Affiliation

Full Program

• Brief program [pdf], Addendum [pdf],
• Full program [pdf]
• Welcome letter [pdf]
• Schedule [pdf]
• Entepreneurship in Systems Biology: How Ideas get Commercialized flyer [pdf]
• Conference map [pdf]
• Exhibit hall map [pdf]
• ICSB important information [pdf]
• Sponsors [pdf]

Registration 8/30 - 9/4, 7:00 a.m. - 6:00 p.m.

Attendee Registration: Memorial Auditorium
Exibitor Registration: Arrillaga Alumni Center, McCaw Hall

Opening Ceremony – 8/30 3:00 - 6:00, Memorial Auditorium

Welecome Reception – 8/30 6:00 - 10:00, Dohrmann Grove

Keynote Lectures – 8/30 3:00 - 6:00, Memorial Auditorium

1. Stan Leibler
2. Tobias Meyer
3. Bernhard Ø. Palsson
4. Jonathan Weissman

Plenary Sessions – Memorial Auditorium

1. Genomes – 8/31 8:00 - 10:30
   1. Marcus Feldman
   2. Daniel S. Rokhsar
   3. Jeong-Sun Seo
   4. Michael Snyder
2. Imaging – 8/31 4:00 - 6:00
   1. Grant Jensen
   2. Stuart Kim
   3. Ernst H. K. Stelzer
   4. Robert Waterson
3. Computational Methods – 9/1 8:00 - 10:30
   1. Adam P. Arkin
   2. Markus W. Covert
   3. Daphne Koller
   4. Gene Myers
4. Chemical Tools – 9/1 11:00 - 1:00
   1. James K. Chen
   2. Klaus Hahn
   3. Kevan Shokat
   4. Tom Wandless
5. Signaling Networks – 9/2 8:00 - 10:30
   1. Galit Lahav
   2. Kong-Joo Lee
   3. Wendell Lim
   4. Peter K. Sorger
6. Dynamics – 9/2 4:00 - 6:00
   1. Michael B. Elowitz
   2. Daniel S. Fisher
   3. Kerwyn C. Huang
   4. Alexander van Oudenaarden
7. Systems Virology – 9/3 8:00 - 10:30
   1. Joe DeRisi
   2. Drew Endy
   3. Karla Kirkegaard

Breakout Sessions

1. Prokaryotic – 8/31 11:00 - 1:00, Hewlett 200
   1. Lucy Shapiro
   2. Christopher A. Voigt
   3. Sunney Xie
   4. Julie A. Theriot
2. Immunology – 8/31 11:00 - 1:00, Annenberg Auditorium
   1. Alan A. Aderem
   2. Arup K. Chakraborty
   3. Garry Nolan
   4. Stephen R. Quake
3. Networks and Regulation – 8/31 11:00 - 1:00, Jordan Hall 420-040
   1. David Bartel
   2. Michael Laub
   3. Christina D. Smolke
   4. Andreas Wagner
4. Cell Cycle – 9/2 11:00 - 1:00, Hewlett 200
   1. Jim Ferrell
   2. Marc W. Kirschner
   3. Dave Morgan
   4. Jan M. Skotheim
5. Emerging Concepts in Cell Signaling – 9/2 11:00 - 1:00, Annenberg Auditorium
   1. Philippe Bastiaens
   2. Charles Boone
   3. Peter Pryciak
   4. Sharad Ramanathan
6. Beyond the Cell – 9/2 11:00 - 1:00, Jordan Hall 420-040
   1. Rustem F. Ismagilov
   2. Shayn Peirce-Cottler
   3. Rob Phillips
   4. Lingchong You
7. HT Data Reconciliation – 9/3 11:00 - 1:00, Hewlett 200
   1. Josh Elias
   2. Trey Ideker
   3. Masaru Tomita
   4. Haiyuan Yu
8. Development – 9/3 11:00 - 1:00, Annenberg Auditorium
   1. Mark Krasnow
   2. Ingmar Riedel-Kruse
   3. Mark D. Biggin
   4. Claire Tomlin
9. Circadian Rhythms – 9/3 11:00 - 1:00, Jordan Hall 420-040
   1. Francis J. Doyle
   2. Jay C. Dunlap
   3. Hiroki R. Ueda

Posters – Arrillaga Alumni Center, McCaw Hall

Poster Session 1 – 8/31 1:00 - 4:00

Poster Session 2 – 9/1 1:00 - 5:00

Poster Session 3 – 9/2 1:00 - 4:00

Entrepreneurship in Systems Biology: How Ideas get Commercialized – Panel/Reception

8/31 6:00 - 8:00, Arrillaga Alumni Center, Fisher Room

Panelists: Malek Faham, Bernhard Ø. Palsson, Stephen R. Quake, and Eric Schadt
Sponsored by: Mohr Davidow Ventures

Workshops

Workshop 1 – 9/3 1:30 - 7:00, 380-380X
Disease Modeling and Simulation
Frank Doyle¹, Tingting Zhang² and Rudiyanto Gunawan^3
1.University of California, Santa Barbara. ^2.Fudan University. ^3.National University of Singapore.

Workshop 2 – 9/3 1:30 - 6:00; 9/4 9:00 - 5:00, 380-380Y
The Systems Biology Markup Language (SBML) Forum 2009
Michael Hucka
California Institute of Technology.

Workshop 3 – 9/4 9:00 - 5:00, 380-380X
Systems Biology of Hypoxic Response and Angiogenesis
Amina Ann Qutub
Rice University.

Tutorials

Tutorial 1 – 8/30 9:15 - 11:45, Hewlett 101
Advanced Modeling, Simulation, and Data Analysis Using Virtual Cell and Virtual Microscopy
Ion I. Moraru, James C. Schaff and Leslie M. Loew
Center for Cell Analysis and Modeling, University of Connecticut Health Center.

Tutorial 2 – 8/30 9:15 - 11:45, Hewlett 102
Inverse Dynamical Problems for Synthetic Biology
James Lu, Christoph Flamm, Stefan Mueller and Rainer Machne
RICAM, Austrian Academy of Sciences. Theoretical Biochemistry Group, University of Vienna.

Tutorial 3 – 8/30 9:15 - 11:45, Hewlett 103
Robustness in Biochemical Circuits: a Reaction Network Theory Approach
Guy Shinar¹, Uri Alon¹ and Martin Feinberg^2
1.Department of Molecular Cell Biology and Department of Physics of Complex Systems, Weizmann Institute of Science, Rehovot 76100, Israel. ^2.William G. Lowrie Department of Chemical & Biomolecular Engineering and Department of Mathematics, Ohio State University, 125 Koffolt Laboratories, 140 W. 19th Avenue, Columbus, OH 43210.

Tutorial 4 – 8/30 9:15 - 11:45, Hewlett 201
State-Based Scenario-Based and Process-Based Modeling: Towards Multi-Scale Biological Modeling Using Biocharts
Hillel Kugler and David Harel
Microsoft Research Cambridge and Weizmann Institute.

Tutorial 5 – 8/30 12:15 - 2:45, Hewlett 101
CellDesigner4.1: A Process Diagram Editor for Gene-Regulatory and Biochemical Networks
Akira Funahashi^1,2, Akiya Jouraku¹, Yukiko Matsuoka², Norihiko Kikuchi³, Hiroaki Kitano^1
1.Keio University. ^2.The Systems Biology Institute. ^3.Mitsui Knowledge Industry.

Tutorial 6 – 8/30 12:15 - 2:45, Hewlett 102
Disease Modeling and its Applications in Model-Based Drug R&D: Example of an Integrated Model of Hypertension, Renal Disease Progression and Therapeutic Modulation of the Renin-Angiotensin-Aldosterone System (RAAS)
Anna Georgieva¹, Hector de Leon², Arthur Lo², Henning Schmidt¹ and Jeff Trimmer^2
1.Modeling & Simulation, Novartis Pharmaceuticals, East Hanover, NJ. ^2.Entelos Inc., Foster City, CA.

Tutorial 7 – 8/30 12:15 - 2:45, Hewlett 103
Retrieving Pathway Data for use in Kinetic Modeling
Oliver Ruebenacker, Ion Moraru and Michael Blinov
University of Connecticut Health Center.

Tutorial 8 – 8/30 12:15 - 2:45, Hewlett 201
Systems Biology Workbench
Frank T. Bergmann^1,2 and Kyung Hyuk Kim^1
1.Department of Bioengineering, University of Washington. ^2.Keck Graduate Institute.

Tutorial 9 – 9/3 1:30 - 4:00, Hewlett 101
MATLAB Toolbox PottersWheel 2.0 - Introduction into Dynamical Modeling and Multi-Experiment Fitting
Thomas Maiwald
Harvard Medical School, Department of Systems Biology, Boston, MA, USA.

Tutorial 10 – CANCELLED
Optimal Experimental Design Strategies in Systems and Synthetic Biology
Filippo Menolascina
Systems and Synthetic Biology Lab, Telethon Institute of Genetics and Medicine, Via Pietro Castellino 111-80131 Naples, Italy.

Tutorial 11 – 9/3 1:30 - 4:00, Hewlett 103
Particle-Based Cellular Simulation with Smoldyn
Steven S. Andrews and Nathan Addy
Molecular Sciences Institute and Fred Hutchinson Cancer Research Center.

Tutorial 12 – 9/3 1:30 - 4:00, Hewlett 201
Rule-Based Kinetic Modeling of Signal Transduction Networks
Michael Blinov
University of Connecticut Health Center.

Tutorial 13 – 9/3 1:30 - 4:00, Hewlett 200
Visualizing and Analyzing *omics Data with VANTED in the Context of SBGN-conform Networks
Christian Klukas, Tobias Czauderna and Falk Schreiber
IPK Gatersleben.

Exhibitions – 8/31 1-4, 6-8; 9/1 1-5; 9/2 1-4, 6-8; Arrillaga Alumni Center, McCaw Hall

Exhibition 1
Fluidigm Corporation

Exhibition 2
Nikon Instruments Inc and TISF

Exhibition 3
BioMed Central LTD

Exhibition 4
ICSB 2010

Exhibition 5
FORSYS - Research Units for Systems Biology

Exhibition 6
The Institution of Engineering and Technology

Exhibition 7
Defense Threat Reduction Agency, Chem-Bio Technologies

Exhibition 9
The Nature Company, Molecular Systems Biology

Exhibition 10
JH Technologies

Exhibition 11
US Deptartment of Energy Genome Programs

Exhibition 12
Industry Information Booth

Exhibition 13
Entelos

Exhibition 14
Cambridge University Press

Exhibition 15
The MIT Press

Exhibition 16
Springer Publishing

Exhibition 17
NextBio

Exhibition 18
Agilent Technologies

San Francisco Excursion

Afternoon of sight-seeing and fun in the bay city. Dinner, entertainment, and transportation included:

• Depart 2pm from Stanford Alumni Center
• Explore California Academy of Sciences at Golden Gate Park
• Visit Golden Gate Bridge
• Driving tour of points of interest in San Francisco
• Cioppino dinner at Neptune's Palace at Fisherman's Wharf Pier 39 (dinner includes 2 drink tickets)
• Visit Twin Peaks
• Depart San Francisco
• Arrive back at Stanford at approximately 10pm

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